Publications from all NCIBC Members

Publications that cite the Nebraska Center for Integrated Biomolecular Communication (NCIBC) CoBRE Support (P20GM113126)

Niu W, Guo J. Cellular Site-Specific Incorporation of Noncanonical Amino Acids in Synthetic Biology. Chem Rev. 2024 Sep 25;124(18):10577-10617. doi: 10.1021/acs.chemrev.3c00938. Epub 2024 Aug 29. PMID: 39207844.

Brooks JR, Heiman TC, Lorenzen SR, Mungloo I, Mirfendereski S, Park JS, Yang R. Transepithelial Electrical Impedance Increase Following Porous Substrate Electroporation Enables Label-Free Delivery. Small. 2024 Jun;20(25):e2310221. doi: 10.1002/smll.202310221. Epub 2024 Feb 23. PMID: 38396158; PMCID: PMC11186731.

Sharma S, Naldrett MJ, Gill MJ, Checco JW. Affinity-Driven Aryl Diazonium Labeling of Peptide Receptors on Living Cells. J Am Chem Soc. 2024 May 15;146(19):13676-13688. doi:  0.1021/jacs.4c04672. Epub 2024 May 1. PMID: 38693710; PMCID: PMC11149697.

Agosto-Maldonado A, Guo J, Niu W. Engineering carboxylic acid reductases and unspecific peroxygenases for flavor and fragrance biosynthesis. J Biotechnol. 2024 Apr 10;385:1-12. doi: 10.1016/j.jbiotec.2024.02.013. Epub 2024 Feb 28. PMID: 38428504; PMCID: PMC11062483.

Murthy D, Attri KS, Shukla SK, Thakur R, Chaika NV, He C, Wang D, Jha K, Dasgupta A, King RJ, Mulder SE, Souchek J, Gebregiworgis T, Rai V, Patel R, Hu T, Rana S, Kollala SS, Pacheco C, Grandgenett PM, Yu F, Kumar V, Lazenby AJ, Black AR, Ulhannan S, Jain A, Edil BH, Klinkebiel DL, Powers R, Natarajan A, Hollingsworth MA, Mehla K, Ly Q, Chaudhary S, Hwang RF, Wellen KE, Singh PK. Cancer-associated fibroblast-derived acetate promotes pancreatic cancer development by altering polyamine metabolism via the ACSS2-SP1-SAT1 axis. Nat Cell Biol. 2024 Apr;26(4):613-627. doi: 10.1038/s41556-024-01372-4. Epub 2024 Mar 1. Erratum in: Nat Cell Biol. 2024 May;26(5):840. doi: 10.1038/s41556-024-01417-8. PMID: 38429478; PMCID: PMC11021164.

Smith N, Dasgupta M, Wych DC, Dolamore C, Sierra RG, Lisova S, Marchany-Rivera D, Cohen AE, Boutet S, Hunter MS, Kupitz C, Poitevin F, Moss FR 3rd, Mittan-Moreau DW, Brewster AS, Sauter NK, Young ID, Wolff AM, Tiwari VK, Kumar N, Berkowitz DB, Hadt RG, Thompson MC, Follmer AH, Wall ME, Wilson MA. Changes in an enzyme ensemble during catalysis observed by high-resolution XFEL crystallography. Sci Adv. 2024 Mar 29;10(13):eadk7201. doi: 10.1126/sciadv.adk7201. Epub 2024 Mar 27. PMID: 38536910; PMCID: PMC10971408.

Camara MB, Lange B, Yesselman JD, Eichhorn CD. Visualizing a two-state conformational ensemble in stem-loop 3 of the transcriptional regulator 7SK RNA. Nucleic Acids Res. 2024 Jan 25;52(2):940-952. doi: 10.1093/nar/gkad1159. PMID: 38084902; PMCID: PMC10810284.

Kapitan JM, Minnick G, Watts BP, Huang N, Rose MA, Yang R, Morin SA. Photografting of Surface-assembled Hydrogel Prepolymers to Elastomeric Substrates for Production of Stimuli-Responsive Microlens Arrays. Adv Funct Mater. 2024 Jan 15;34(3):2305711. doi: 10.1002/adfm.202305711. Epub 2023 Sep 3. PMID: 39281808; PMCID: PMC11392041.

Kim E, Riehl BD, Bouzid T, Yang R, Duan B, Donahue HJ, Lim JY. YAP mechanotransduction under cyclic mechanical stretch loading for mesenchymal stem cell osteogenesis is regulated by ROCK. Front Bioeng Biotechnol. 2024 Jan 11;11:1306002. doi: 10.3389/fbioe.2023.1306002. PMID: 38274006; PMCID: PMC10809151.

Abid MSR, Bredahl EC, Clifton AD, Qiu H, Andrews MT, Checco JW. Proteomic Identification of Seasonally Expressed Proteins Contributing to Heart Function and the Avoidance of Skeletal Muscle Disuse Atrophy in a Hibernating Mammal. J Proteome Res. 2024 Jan 5;23(1):215-225. doi: 10.1021/acs.jproteome.3c00540. Epub 2023 Dec 20. PMID: 38117800; PMCID: PMC10843731.

Abid MSR, Qiu H, Checco JW. Label-Free Quantitation of Endogenous Peptides. Methods Mol Biol. 2024;2758:125-150. doi: 10.1007/978-1-0716-3646-6_7. PMID: 38549012; PMCID: PMC11027169.

Andrews T, Seravallic J, Powers R. The reversible low-temperature instability of human DJ-1 oxidative states. Biopolymers. 2024 Jan;115(1):e23534. doi: 10.1002/bip.23534. Epub 2023 Mar 27. PMID: 36972340; PMCID: PMC10948107.

Sidner B, Lerma A, Biswas B, Do TVT, Yu Y, Ronish LA, McCullough H, Auchtung JM, Piepenbrink KH. Flagellin is essential for initial attachment to mucosal surfaces by <i>Clostridioides difficile</i>. Microbiol Spectr. 2023 Dec 12;11(6):e0212023. doi: 10.1128/spectrum.02120-23. Epub 2023 Oct 12. PMID: 37823657; PMCID: PMC10714722.

Sukreet S, Braga CP, Adamec J, Cui J, Zempleni J. The absorption of bovine milk small extracellular vesicles largely depends on galectin 3 and galactose ligands in human intestinal cells and C57BL/6J mice. Am J Physiol Cell Physiol. 2023 Dec 1;325(6):C1421-C1430. doi: 10.1152/ajpcell.00282.2023. Epub 2023 Nov 13. PMID: 37955122; PMCID: PMC10861145.

Jeppesen MJ, Powers R. Multiplatform untargeted metabolomics. Magn Reason Chem. 2023 Dec;61(12):628-653. doi: 10.1002/mrc.5350. Epub 2023 Apr 17. PMID: 37005774; PMCID: PMC10948111.

Mousavi S, Qiu H, Heinis FI, Bredahl EC, Ridwan Abid MS, Clifton AD, Andrews MT, Checco JW. Effects of Anesthetic Administration on Rat Hypothalamus and Cerebral Cortex Peptidome. ACS Chem Neurosci. 2023 Nov 15;14(22):3986-3992. doi: 10.1021/acschemneuro.3c00499. Epub 2023 Oct 25. PMID: 37879091; PMCID: PMC10872895.

Brooks JR, Heiman TC, Lorenzen SR, Mungloo I, Mirfendereski S, Park JS, Yang R. Transepithelial Electrical Impedance Increase Following Porous Substrate Electroporation Enables Label-Free Delivery. bioRxiv [Preprint]. 2023 Nov 3:2023.10.17.562630. doi: 10.1101/2023.10.17.562630. Update in: Small. 2024 Jun;20(25):e2310221. doi: 10.1002/smll.202310221. PMID: 37905105; PMCID: PMC10614851.

Ren R, Wang X, Leas DA, Scheurer C, Hoevel S, Cal M, Chen G, Zhong L, Katneni K, Pham T, Patil R, Sil D, Walters MJ, Schulze TT, Neville AJ, Dong Y, Wittlin S, Kaiser M, Davis PH, Charman SA, Vennerstrom JL. Antimalarial Dibenzannulated Medium-Ring Keto Lactams. ACS Infect Dis. 2023 Oct 13;9(10):1964-1980. doi: 10.1021/acsinfecdis.3c00245. Epub 2023 Sep 11. PMID: 37695781; PMCID: PMC10860121.

Pandey E, Harris EN. Chloroquine and cytosolic galectins affect endosomal escape of antisense oligonucleotides after Stabilin-mediated endocytosis. Mol Ther Nucleic Acids. 2023 Jul 19;33:430-443. doi: 10.1016/j.omtn.2023.07.019. PMID: 37575283; PMCID: PMC10412722.

McMahon-Cole H, Johnson A, Sadat Aghamiri S, Helikar T, Crawford LB. Modeling and Remodeling the Cell: How Digital Twins and HCMV Can Elucidate the Complex Interactions of Viral Latency, Epigenetic Regulation, and Immune Responses. Curr Clin Microbiol Rep. 2023 Sep;10(3):141-151. doi: 10.1007/s40588-023-00201-w. Epub 2023 Jul 29. PMID: 37901689; PMCID: PMC10601359.

Macke AJ, Pachikov AN, Divita TE, Morris ME, LaGrange CA, Holzapfel MS, Kubyshkin AV, Zyablitskaya EY, Makalish TP, Eremenko SN, Qiu H, Riethoven JM, Hemstreet GP, Petrosyan A. Targeting the ATF6-Mediated ER Stress Response and Autophagy Blocks Integrin-Driven Prostate Cancer Progression. Mol Cancer Res. 2023 Sep 1;21(9):958-974. doi: 10.1158/1541-7786.MCR-23-0108. PMID: 37314749; PMCID: PMC10527559.

Vo N, Sidner BS, Yu Y, Piepenbrink KH. Type IV Pilus-Mediated Inhibition of Acinetobacter baumannii</i> Biofilm Formation by Phenothiazine Compounds. Microbiol Spectr. 2023 Aug 17;11(4):e0102323. doi: 10.1128/spectrum.01023-23. Epub 2023 Jun 21. PMID: 37341603; PMCID: PMC10433872.

Smith N, Dasgupta M, Wych DC, Dolamore C, Sierra RG, Lisova S, Marchany-Rivera D, Cohen AE, Boutet S, Hunter MS, Kupitz C, Poitevin F, Moss FR 3rd, Brewster AS, Sauter NK, Young ID, Wolff AM, Tiwari VK, Kumar N, Berkowitz DB, Hadt RG, Thompson MC, Follmer AH, Wall ME, Wilson MA. Changes in an Enzyme Ensemble During Catalysis Observed by High Resolution XFEL Crystallography. bioRxiv [Preprint]. 2023 Aug 16:2023.08.15.553460. doi: 10.1101/2023.08.15.553460. Update in: Sci Adv. 2024 Mar 29;10(13):eadk7201. doi: 10.1126/sciadv.adk7201. PMID: 37645800; PMCID: PMC10462001.

Camara MB, Lange B, Yesselman JD, Eichhorn CD. Visualizing a two-state conformational ensemble in stem-loop 3 of the transcriptional regulator 7SK RNA. bioRxiv [Preprint]. 2023 Aug 12:2023.08.09.552709. doi: 10.1101/2023.08.09.552709. Update in: Nucleic Acids Res. 2024 Jan 25;52(2):940-952. doi: 10.1093/nar/gkad1159. PMID: 37609139; PMCID: PMC10441402.

Mousavi S, Qiu H, Andrews MT, Checco JW. Peptidomic Analysis Reveals Seasonal Neuropeptide and Peptide Hormone Changes in the Hypothalamus and Pituitary of a Hibernating Mammal. ACS Chem Neurosci. 2023 Jul 19;14(14):2569-2581. doi: 10.1021/acschemneuro.3c00268. Epub 2023 Jul 3. PMID: 37395621; PMCID: PMC10529138.

Crawford LB. Hematopoietic stem cells and betaherpesvirus latency. Front Cell Infect Microbiol. 2023 Jun 6;13:1189805. doi: 10.3389/fcimb.2023.1189805. PMID: 37346032; PMCID: PMC10279960.

Kumar N, Rachagani S, Natarajan G, Crook A, Gopal T, Rajamanickam V, Kaushal JB, Nagabhishek SN, Powers R, Batra SK, Saraswathi V. Histidine Enhances the Anticancer Effect of Gemcitabine against Pancreatic Cancer via Disruption of Amino Acid Homeostasis and Oxidant-Antioxidant Balance. Cancers (Basel). 2023 May 3;15(9):2593. doi: 10.3390/cancers15092593. PMID: 37174059; PMCID: PMC10177467.

Niu W, Guo J. Co-translational Installation of Posttranslational Modifications by Non-canonical Amino Acid Mutagenesis. Chembiochem. 2023 May 2;24(9):e202300039. doi: 10.1002/cbic.202300039. Epub 2023 Mar 30. PMID:36853967; PMCID: PMC10202221.

Pattnaik A, Sahoo BR, Struble LR, Borgstahl GEO, Zhou Y, Franco R, Barletta RG, Osorio FA, Petro TM, Pattnaik AK. A Ferritin Nanoparticle-Based Zika Virus Vaccine Candidate Induces Robust Humoral and Cellular Immune Responses and Protects Mice from Lethal Virus Challenge. Vaccines (Basel). 2023 Apr 10;11(4):821. doi: 10.3390/vaccines11040821. PMID: 37112733; PMCID: PMC10143468.

Maroli AS, Powers R. Closing the gap between in vivo and in vitro omics: using QA/QC to strengthen ex vivo NMR metabolomics. NMR Biomed. 2023 Apr;36(4):e4594. doi: 10.1002/nbm.4594. Epub 2021 Aug 8. PMID: 34369014; PMCID: PMC8821733.

Porwal R, Hayward SL, Kidambi S. Protocol to engineer nanofilms embedded lipid nanoparticles for controlled and targeted drug delivery (NECTAR). STAR Protoc. 2023 Mar 17;4(1):101685. doi: 10.1016/j.xpro.2022.101685. Epub 2023 Feb 28. PMID: 36856769; PMCID: PMC10011652.

Yussif BM, Blasing CV, Checco JW. Endogenous l- to d-amino acid residue isomerization modulates selectivity between distinct neuropeptide receptor family members. Proc Natl Acad Sci U S A. 2023 Mar 14;120(11):e2217604120. doi: 10.1073/pnas.2217604120. Epub 2023 Mar 6. PMID: 36877849; PMCID: PMC10089201.

Ma B, Niu W, Guo J. Proximity-enhanced protein crosslinking through an alkene-tetrazine reaction. Bioorg Chem. 2023 Mar;132:106359. doi: 10.1016/j.bioorg.2023.106359. Epub 2023 Jan 11. PMID: 36642019; PMCID: PMC9957846.

Shahjin F, Patel M, Machhi J, Cohen JD, Nayan MU, Yeapuri P, Zhang C, Waight E, Hasan M, Abdelmoaty MM, Dash PK, Zhou Y, Andreu I, Gendelman HE, Kevadiya BD. Multipolymer microsphere delivery of SARS-CoV-2 antigens. Acta Biomater. 2023 Mar 1;158:493-509. doi: 10.1016/j.actbio.2022.12.043. Epub 2022 Dec 26. PMID: 36581007; PMCID: PMC9791794.

Sahoo BR, Crook AA, Pattnaik A, Torres-Gerena AD, Khalimonchuk O, Powers R, Franco R, Pattnaik AK. Redox Regulation and Metabolic Dependency of Zika Virus Replication: Inhibition by Nrf2-Antioxidant Response and NAD(H) Antimetabolites. J Virol. 2023 Feb 28;97(2):e0136322. doi: 10.1128/jvi.01363-22. Epub 2023 Jan 23. PMID: 36688653; PMCID: PMC9972919.

Ramos de Dios SM, Hass JL, Graham DL, Kumar N, Antony AE, Morton MD, Berkowitz DB. Information-Rich, Dual-Function ¹³C/²H-Isotopic Crosstalk NMR Assay for Human Serine Racemase (hSR) Provides a PLP-Enzyme "Partitioning Fingerprint" and Reveals Disparate Chemotypes for hSR Inhibition. J Am Chem Soc. 2023 Feb 8;145(5):3158-3174. doi: 10.1021/jacs.2c12774. Epub 2023 Jan 25. PMID: 36696670; PMCID: PMC11103274.

Minnick G, Tajvidi Safa B, Rosenbohm J, Lavrik NV, Brooks J, Esfahani AM, Samaniego A, Meng F, Richter B, Gao W, Yang R. Two-Photon Polymerized Shape Memory Microfibers: A New Mechanical Characterization Method in Liquid. Adv Funct Mater. 2023 Jan 16;33(3):2206739. doi: 10.1002/adfm.202206739. Epub 2022 Sep 22. PMID: 36817407; PMCID: PMC9937026.

Kaur S, Kidambi S, Ortega-Ribera M, Thuy LTT, Nieto N, Cogger VC, Xie WF, Tacke F, Gracia-Sancho J. In Vitro Models for the Study of Liver Biology and Diseases: Advances and Limitations. Cell Mol Gastroenterol Hepatol. 2023;15(3):559-571. doi: 10.1016/j.jcmgh.2022.11.008. Epub 2022 Nov 26. PMID: 36442812; PMCID: PMC9868680.

Sobeh AM, Eichhorn CD. C-terminal determinants for RNA binding motif 7 protein stability and RNA recognition. Biophys Chem. 2023 Jan;292:106928. doi: 10.1016/j.bpc.2022.106928. Epub 2022 Nov 8. PMID: 36427363; PMCID: PMC9768861.

Shakyawar SK, Mishra NK, Vellichirammal NN, Cary L, Helikar T, Powers R, Oberley-Deegan RE, Berkowitz DB, Bayles KW, Singh VK, Guda C. A Review of Radiation-Induced Alterations of Multi-Omic Profiles, Radiation Injury Biomarkers, and Countermeasures. Radiat Res. 2023 Jan 1;199(1):89-111. doi: 10.1667/RADE-21-00187.1. PMID: 36368026; PMCID: PMC10279411.

Sakallioglu IT, Tripp B, Kubik J, Casey CA, Thomes P, Powers R. Multiomics Approach Captures Hepatic Metabolic Network Altered by Chronic Ethanol Administration. Biology (Basel). 2022 Dec 23;12(1):28. doi: 10.3390/biology12010028. PMID: 36671721; PMCID: PMC9855439.

Crawford LB. Human Embryonic Stem Cells as a Model for Hematopoietic Stem Cell Differentiation and Viral Infection. Curr Protoc. 2022 Dec;2(12):e622. doi: 10.1002/cpz1.622. PMID: 36521018; PMCID: PMC9885899.

Bhinderwala F, E Roth H, Noel H, Feng D, Powers R. Chemical shift variations in common metabolites. J Magn Reson. 2022 Dec;345:107335. doi: 10.1016/j.jmr.2022.107335. Epub 2022 Nov 13. PMID: 36410060; PMCID: PMC9742302.

Bhinderwala F, Vu T, Smith TG, Kosacki J, Marshall DD, Xu Y, Morton M, Powers R. Leveraging the HMBC to Facilitate Metabolite Identification. Anal Chem. 2022 Nov 29;94(47):16308-16318. doi: 10.1021/acs.analchem.2c02902. Epub 2022 Nov 14. PMID: 36374521; PMCID: PMC10948112.

Sakallioglu IT, Maroli AS, De Lima Leite A, Marshall DD, Evans BW, Zinniel DK, Dussault PH, Barletta RG, Powers R. Multi-omics Investigation into the Mechanism of Action of an Anti-tubercular Fatty Acid Analogue. J Am Chem Soc. 2022 Nov 23;144(46):21157-21173. doi: 10.1021/jacs.2c08238. Epub 2022 Nov 11. PMID: 36367461; PMCID: PMC10948109.

He X, Gao T, Chen Y, Liu K, Guo J, Niu W. Genetic Code Expansion in <i>Pseudomonas putida</i> KT2440. ACS Synth Biol. 2022 Nov 18;11(11):3724-3732. doi: 10.1021/acssynbio.2c00325. Epub 2022 Oct 26. PMID: 36287825; PMCID: PMC10656745.

Zhai H, Jin X, Minnick G, Rosenbohm J, Hafiz MAH, Yang R, Meng F. Spatially Guided Construction of Multilayered Epidermal Models Recapturing Structural Hierarchy and Cell-Cell Junctions. Small Sci. 2022 Nov;2(11):2200051. doi: 10.1002/smsc.202200051. Epub 2022 Sep 14. PMID: 36590765; PMCID: PMC9799093.

Rosenbohm J, Minnick G, Safa BT, Esfahani AM, Jin X, Zhai H, Lavrik NV, Yang R. A multi-material platform for imaging of single cell-cell junctions under tensile load fabricated with two-photon polymerization. Biomed Microdevices. 2022 Oct 8;24(4):33. doi: 10.1007/s10544-022-00633-z. PMID: 36207557; PMCID: PMC11104271.

Mousavi S, Qiu H, Heinis FI, Abid MSR, Andrews MT, Checco JW. Short-Term Administration of Common Anesthetics Does Not Dramatically Change the Endogenous Peptide Profile in the Rat Pituitary. ACS Chem Neurosci. 2022 Oct 5;13(19):2888-2896. doi: 10.1021/acschemneuro.2c00359. Epub 2022 Sep 20. PMID: 36126283; PMCID: PMC9547841.

Ronish LA, Sidner B, Yu Y, Piepenbrink KH. Recognition of extracellular DNA by type IV pili promotes biofilm formation by Clostridioides difficile. J Biol Chem. 2022 Oct;298(10):102449. doi: 10.1016/j.jbc.2022.102449. Epub 2022 Sep 3. PMID: 36064001; PMCID: PMC9556784.

Roth HE, De Lima Leite A, Palermo NY, Powers R. Leveraging the Structure of DNAJA1 to Discover Novel Potential Pancreatic Cancer Therapies. Biomolecules. 2022 Sep 29;12(10):1391. doi: 10.3390/biom12101391. PMID: 36291603; PMCID: PMC9599757.

Chen Y, He X, Ma B, Liu K, Gao T, Niu W, Guo J. Noncanonical amino acid mutagenesis in response to recoding signal-enhanced quadruplet codons. Nucleic Acids Res. 2022 Sep 9;50(16):e94. doi: 10.1093/nar/gkac474. PMID: 35657094; PMCID: PMC9458425.

Mueller J, Willett H, Feist AM, Niu W. Engineering Pseudomonas putida for improved utilization of syringyl aromatics. Biotechnol Bioeng. 2022 Sep;119(9):2541-2550. doi: 10.1002/bit.28131. Epub 2022 May 16. PMID: 35524438; PMCID: PMC9378539.

Roth HE, Powers R. Meta-Analysis Reveals Both the Promises and the Challenges of Clinical Metabolomics. Cancers (Basel). 2022 Aug 18;14(16):3992. doi: 10.3390/cancers14163992. PMID: 36010984; PMCID: PMC9406125.

Allen GL, Grahn AK, Kourentzi K, Willson RC, Waldrop S, Guo J, Kay BK. Expanding the chemical diversity of M13 bacteriophage. Front Microbiol. 2022 Aug 8;13:961093. doi: 0.3389/fmicb.2022.961093. PMID: 36003937; PMCID: PMC9393631.

Wishart DS, Cheng LL, Copié V, Edison AS, Eghbalnia HR, Hoch JC, Gouveia GJ, Pathmasiri W, Powers R, Schock TB, Sumner LW, Uchimiya M. NMR and Metabolomics-A Roadmap for the Future. Metabolites. 2022 Jul 23;12(8):678. doi: 10.3390/metabo12080678. PMID: 35893244; PMCID: PMC9394421.

Catlett JL, Carr S, Cashman M, Smith MD, Walter M, Sakkaff Z, Kelley C, Pierobon M, Cohen MB, Buan NR. Metabolic Synergy between Human Symbionts <i>Bacteroides</i> and <i>Methanobrevibacter</i>. Microbiol Spectr. 2022 Jun 29;10(3):e0106722. doi: 10.1128/spectrum.01067-22. Epub 2022 May 10. PMID:35536023; PMCID: PMC9241691.

Stanke KM, Kidambi S. Direct-Contact Co-culture of Astrocytes and Glioblastoma Cells Patterned using Polyelectrolyte Multilayer Templates. J Vis Exp. 2022 Jun 22;(184):10.3791/63420. doi: 10.3791/63420. PMID: 35815979; PMCID: PMC10363413.

Somerville GA, Parrett AA, Reed JM, Gardner SG, Morton M, Powers R. Human Serum Alters the Metabolism and Antibiotic Susceptibility of <i>Staphylococcus aureus</i>. J Proteome Res. 2022 Jun 3;21(6):1467-1474. doi:10.1021/acs.jproteome.2c00073. Epub 2022 May 10. PMID: 35537087; PMCID: PMC10962117.

Bouzid T, Esfahani AM, Safa BT, Kim E, Saraswathi V, Kim JK, Yang R, Lim JY. Rho/ROCK mechanosensor in adipocyte stiffness and traction force generation. Biochem Biophys Res Commun. 2022 May 28;606:42-48. doi: 10.1016/j.bbrc.2022.03.078. Epub 2022 Mar 17. PMID: 35339750; PMCID: PMC9035097.

Abid MSR, Qiu H, Tripp BA, de Lima Leite A, Roth HE, Adamec J, Powers R, Checco JW. Peptidomics analysis reveals changes in small urinary peptides in patients with interstitial cystitis/bladder pain syndrome. Sci Rep. 2022 May 18;12(1):8289. doi: 10.1038/s41598-022-12197-2. PMID: 35585122; PMCID: PMC9117215.

Machhi J, Yeapuri P, Markovic M, Patel M, Yan W, Lu Y, Cohen JD, Hasan M, Abdelmoaty MM, Zhou Y, Xiong H, Wang X, Mosley RL, Gendelman HE, Kevadiya BD. Europium-Doped Cerium Oxide Nanoparticles for Microglial Amyloid Beta Clearance and Homeostasis. ACS Chem Neurosci. 2022 Apr 20;13(8):1232-1244. doi: 10.1021/acschemneuro.1c00847. Epub 2022 Mar 21. PMID: 35312284; PMCID: PMC9227977.

Sukreet S, Pereira Braga C, An TT, Adamec J, Cui J, Zempleni J. Ultrasonication of Milk Decreases the Content of Exosomes and MicroRNAs in an Exosome-Defined Rodent Diet. J Nutr. 2022 Apr 1;152(4):961-970. doi: 10.1093/jn/nxab452. PMID: 34982830; PMCID: PMC8970979.

Zhao H, Zhan Y, Xu Z, John Nduwamungu J, Zhou Y, Powers R, Xu C. The application of machine-learning and Raman spectroscopy for the rapid detection of edible oils type and adulteration. Food Chem. 2022 Mar 30;373(Pt B):131471. doi: 10.1016/j.foodchem.2021.131471. Epub 2021 Oct 26. PMID: 34749090; PMCID: PMC10304463.

Kayashima Y, Clanton CA, Lewis AM, Sun X, Hiller S, Huynh P, Wilder J, Hagaman J, Li F, Maeda-Smithies N, Harris EN. Reduction of <i>Stabilin-2</i> Contributes to a Protection Against Atherosclerosis. Front Cardiovasc Med. 2022 Mar 11;9:818662. doi: 10.3389/fcvm.2022.818662. PMID: 35360009; PMCID: PMC8963368.

Brooks JR, Mungloo I, Mirfendereski S, Quint JP, Paul D, Jaberi A, Park JS, Yang R. An equivalent circuit model for localized electroporation on porous substrates. Biosens Bioelectron. 2022 Mar 1;199:113862. doi: 10.1016/j.bios.2021.113862. Epub 2021 Dec 10. PMID: 34923307; PMCID: PMC8741749.

Sakallioglu IT, Maroli AS, Leite AL, Powers R. A reversed phase ultra-high-performance liquid chromatography-data independent mass spectrometry method for the rapid identification of mycobacterial lipids. J Chromatogr A. 2022 Jan 11;1662:462739. doi: 0.1016/j.chroma.2021.462739. Epub 2021 Dec 8. PMID:34929571; PMCID: PMC8805281.

Yussif BM, Checco JW. Evaluation of endogenous peptide stereochemistry using liquid chromatography-mass spectrometry-based spiking experiments. Methods Enzymol. 2022;663:205-234. doi: 10.1016/bs.mie.2021.10.009. Epub 2021 Dec 9. PMID: 35168790; PMCID: PMC8985447.

Miller HA, Schake MA, Bony BA, Curtis ET, Gee CC, McCue IS, Ripperda TJ Jr, Chatzizisis YS, Kievit FM, Pedrigi RM. Smooth muscle cells affect differential nanoparticle accumulation in disturbed blood flow-induced murine atherosclerosis. PLoS One. 2021 Dec 9;16(12):e0260606. doi: 10.1371/journal.pone.0260606. PMID: 34882722; PMCID: PMC8659666.

Pustovalova Y, Delaglio F, Craft DL, Arthanari H, Bax A, Billeter M, Bostock MJ, Dashti H, Hansen DF, Hyberts SG, Johnson BA, Kazimierczuk K, Lu H, Maciejewski M, Miljenović TM, Mobli M, Nietlispach D, Orekhov V, Powers R, Qu X, Robson SA, Rovnyak D, Wagner G, Ying J, Zambrello M, Hoch JC, Donoho DL, Schuyler AD. NUScon: a community-driven platform for quantitative evaluation of nonuniform sampling in NMR. Magn Reson (Gott). 2021 Nov 25;2(2):843-861. doi: 10.5194/mr-2-843-2021. PMID: 37905225; PMCID: PMC10583271.

Abdelmoaty MM, Yeapuri P, Machhi J, Olson KE, Shahjin F, Kumar V, Zhou Y, Liang J, Pandey K, Acharya A, Byrareddy SN, Mosley RL, Gendelman HE. Defining the Innate Immune Responses for SARS-CoV-2-Human Macrophage Interactions. Front Immunol. 2021 Oct 4;12:741502. doi: 10.3389/fimmu.2021.741502. PMID: 34671355; PMCID: PMC8521106.

Pachikov AN, Gough RR, Christy CE, Morris ME, Casey CA, LaGrange CA, Bhat G, Kubyshkin AV, Fomochkina II, Zyablitskaya EY, Makalish TP, Golubinskaya EP, Davydenko KA, Eremenko SN, Riethoven JM, Maroli AS, Payne TS, Powers R, Lushnikov AY, Macke AJ, Petrosyan A. The non-canonical mechanism of ER stress-mediated progression of prostate cancer. J Exp Clin Cancer Res. 2021 Sep 14;40(1):289. doi: 10.1186/s13046-021-02066-7. PMID: 34521429; PMCID: PMC8439065.

Crook AA, Zamora-Olivares D, Bhinderwala F, Woods J, Winkler M, Rivera S, Shannon CE, Wagner HR, Zhuang DL, Lynch JE, Berryhill NR, Runnebaum RC, Anslyn EV, Powers R. Combination of two analytical techniques improves wine classification by Vineyard, Region, and vintage. Food Chem. 2021 Aug 30;354:129531. doi: 10.1016/j.foodchem.2021.129531. Epub 2021 Mar 10. PMID: 33756314; PMCID: PMC8336071.

Honrao C, Teissier N, Zhang B, Powers R, O'Day EM. Gadolinium-Based Paramagnetic Relaxation Enhancement Agent Enhances Sensitivity for NUS Multidimensional NMR-Based Metabolomics. Molecules. 2021 Aug 24;26(17):5115. doi: 10.3390/molecules26175115. PMID: 34500549; PMCID: PMC8433644.

Roth HE, Bhinderwala F, Franco R, Zhou Y, Powers R. DNAJA1 Dysregulates Metabolism Promoting an Antiapoptotic Phenotype in Pancreatic Ductal Adenocarcinoma. J Proteome Res. 2021 Aug 6;20(8):3925-3939. doi: 10.1021/acs.jproteome.1c00233. Epub 2021 Jul 15. PMID: 34264680; PMCID: PMC8823314.

Zhang C, Schumacher KN, Dodds ED, Hage DS. Glycoprotein analysis using lectin microcolumns and capillary electrophoresis: Characterization of alpha₁-acid glycoprotein by combined separation methods. J Chromatogr B Analyt Technol Biomed Life Sci. 2021 Aug 1;1179:122855. doi: 10.1016/j.jchromb.2021.122855. Epub 2021 Jul 9. PMID: 34274643; PMCID: PMC8403148.

Crook A, De Lima Leite A, Payne T, Bhinderwala F, Woods J, Singh VK, Powers R. Radiation exposure induces cross-species temporal metabolic changes that are mitigated in mice by amifostine. Sci Rep. 2021 Jul 7;11(1):14004. doi: 10.1038/s41598-021-93401-7. PMID: 34234212; PMCID: PMC8263605.

Yue H, Jiang J, Taylor AJ, Leite AL, Dodds ED, Du L. Outer Membrane Vesicle-Mediated Codelivery of the Antifungal HSAF Metabolites and Lytic Polysaccharide Monooxygenase in the Predatory <i>Lysobacter enzymogenes</i>. ACS Chem Biol. 2021 Jun 18;16(6):1079-1089. doi: 10.1021/acschembio.1c00260. Epub 2021 May 25. PMID: 34032403; PMCID: PMC8797504.

Natarajan V, Moeun Y, Kidambi S. Exploring Interactions between Primary Hepatocytes and Non-Parenchymal Cells on Physiological and Pathological Liver Stiffness. Biology (Basel). 2021 May 5;10(5):408. doi: 10.3390/biology10050408. PMID: 34063016; PMCID: PMC8147966.

Vecchio AJ, Rathnayake SS, Stroud RM. Structural basis for <i>Clostridium perfringens</i> enterotoxin targeting of claudins at tight junctions in mammalian gut. Proc Natl Acad Sci U S A. 2021 Apr 13;118(15):e2024651118. doi: 10.1073/pnas.2024651118. PMID: 33876770; PMCID: PMC8053971.

Abid MSR, Mousavi S, Checco JW. Identifying Receptors for Neuropeptides and Peptide Hormones: Challenges and Recent Progress. ACS Chem Biol. 2021 Feb 19;16(2):251-263. doi: 10.1021/acschembio.0c00950. Epub 2021 Feb 4. PMID: 33539706; PMCID: PMC8479824.

Esfahani AM, Rosenbohm J, Safa BT, Lavrik NV, Minnick G, Zhou Q, Kong F, Jin X, Kim E, Liu Y, Lu Y, Lim JY, Wahl JK 3rd, Dao M, Huang C, Yang R. Characterization of the strain-rate-dependent mechanical response of single cell-cell junctions. Proc Natl Acad Sci U S A. 2021 Feb 16;118(7):e2019347118. doi: 10.1073/pnas.2019347118. PMID: 33531347; PMCID: PMC7896335.

Poudel R, Bhinderwala F, Morton M, Powers R, Rose DJ. Metabolic profiling of historical and modern wheat cultivars using proton nuclear magnetic resonance spectroscopy. Sci Rep. 2021 Feb 4;11(1):3080. doi: 10.1038/s41598-021-82616-3. PMID: 33542370; PMCID: PMC7862595.

Bidne KL, Rister AL, McCain AR, Hitt BD, Dodds ED, Wood JR. Maternal obesity alters placental lysophosphatidylcholines, lipid storage, and the expression of genes associated with lipid metabolism‡. Biol Reprod. 2021 Jan 4;104(1):197-210. doi: 10.1093/biolre/ioaa191. PMID: 33048132; PMCID: PMC7946805.

Osna NA, Ganesan M, Seth D, Wyatt TA, Kidambi S, Kharbanda KK. Second hits exacerbate alcohol-related organ damage: an update. Alcohol Alcohol. 2021 Jan 4;56(1):8-16. doi: 10.1093/alcalc/agaa085. PMID: 32869059; PMCID: PMC7768623.

Sharma S, Checco JW. Evaluating functional ligand-GPCR interactions in cell-based assays. Methods Cell Biol. 2021;166:15-42. doi:10.1016/bs.mcb.2021.06.006. Epub 2021 Jul 29. PMID: 34752330; PMCID: PMC9000926.

Jin X, Rosenbohm J, Kim E, Esfahani AM, Seiffert-Sinha K, Wahl JK 3rd, Lim JY, Sinha AA, Yang R. Modulation of Mechanical Stress Mitigates Anti-Dsg3 Antibody-Induced Dissociation of Cell-Cell Adhesion. Adv Biol (Weinh). 2021 Jan;5(1):e2000159. doi: 10.1002/adbi.202000159. Epub 2021 Jan 4. PMID: 33724731; PMCID: PMC7993752.

Brooks J, Minnick G, Mukherjee P, Jaberi A, Chang L, Espinosa HD, Yang R. High Throughput and Highly Controllable Methods for In Vitro Intracellular Delivery. Small. 2020 Dec;16(51):e2004917. doi: 10.1002/smll.202004917. Epub 2020 Nov 25. PMID: 33241661; PMCID: PMC8729875.

Crook AA, Powers R. Quantitative NMR-Based Biomedical Metabolomics: Current Status and Applications. Molecules. 2020 Nov 4;25(21):5128. doi:10.3390/molecules25215128. PMID: 33158172; PMCID: PMC7662776.

Jaberi A, Monemian Esfahani A, Aghabaglou F, Park JS, Ndao S, Tamayol A, Yang R. Microfluidic Systems with Embedded Cell Culture Chambers for High-Throughput Biological Assays. ACS Appl Bio Mater. 2020 Oct 19;3(10):6661-6671. doi: 10.1021/acsabm.0c00439. Epub 2020 Aug 17. PMID: 35019392; PMCID: PMC10081828.

Riehl BD, Kim E, Lee JS, Duan B, Yang R, Donahue HJ, Lim JY. The Role of Fluid Shear and Metastatic Potential in Breast Cancer Cell Migration. J Biomech Eng. 2020 Oct 1;142(10):101001. doi: 10.1115/1.4047076. PMID: 32346724; PMCID: PMC7477709.

Catlett JL, Catazaro J, Cashman M, Carr S, Powers R, Cohen MB, Buan NR. Metabolic Feedback Inhibition Influences Metabolite Secretion by the Human Gut Symbiont Bacteroides thetaiotaomicron. mSystems. 2020 Sep 1;5(5):e00252-20. doi: 10.1128/mSystems.00252-20. PMID: 32873608; PMCID: PMC7470985.

Perez-Toralla K, Olivera-Torres A, Rose MA, Esfahani AM, Reddy K, Yang R, Morin SA. Facile Production of Large-Area Cell Arrays Using Surface-Assembled Microdroplets. Adv Sci (Weinh). 2020 Jun 17;7(15):2000769. doi:10.1002/advs.202000769. PMID: 32775160; PMCID: PMC7404142.

Bhinderwala F, Evans P, Jones K, Laws BR, Smith TG, Morton M, Powers R. Phosphorus NMR and Its Application to Metabolomics. Anal Chem. 2020 Jul 21;92(14):9536-9545. doi: 10.1021/acs.analchem.0c00591. Epub 2020 Jun 29. PMID: 32530272; PMCID: PMC8327684.

Parrett A, Reed JM, Gardner SG, Mishra NN, Bayer AS, Powers R, Somerville GA. Metabolic changes associated with adaptive resistance to daptomycin in Streptococcus mitis-oralis. BMC Microbiol. 2020 Jun 15;20(1):162. doi: 10.1186/s12866-020-01849-w. PMID: 32539684; PMCID: PMC7296729.

Zhang B, Powers R, O'Day EM. Evaluation of Non-Uniform Sampling 2D ¹H-¹³C HSQC Spectra for Semi-Quantitative Metabolomics. Metabolites. 2020 May 16;10(5):203. doi: 10.3390/metabo10050203. PMID: 32429340; PMCID: PMC7281502.

Romereim SM, Johnston CA, Redwine AL, Wachs RA. Development of an in vitro intervertebral disc innervation model to screen neuroinhibitory biomaterials. J Orthop Res. 2020 May;38(5):1016-1026. doi: 10.1002/jor.24557. Epub 2019 Dec 19. PMID: 31825104; PMCID: PMC7244214.

Perez VM, Gabell J, Behrens M, Wase N, DiRusso CC, Black PN. Deletion of fatty acid transport protein 2 (FATP2) in the mouse liver changes the metabolic landscape by increasing the expression of PPARα-regulated genes. J Biol Chem. 2020 Apr 24;295(17):5737-5750. doi: 10.1074/jbc.RA120.012730. Epub 2020 Mar 18. PMID: 32188695; PMCID: PMC7186177.

Derakhshandeh H, Aghabaglou F, McCarthy A, Mostafavi A, Wiseman C, Bonick Z, Ghanavati I, Harris S, Kreikemeier-Bower C, Basri SMM, Rosenbohm J, Yang R, Mostafalu P, Orgill D, Tamayol A. A Wirelessly Controlled Smart Bandage with 3D-Printed Miniaturized Needle Arrays. Adv Funct Mater. 2020 Mar 24;30(13):1905544. doi: 10.1002/adfm.201905544. Epub 2020 Feb 13. PMID: 34354556; PMCID: PMC8336080.

Kelly MI, Dodds ED. Parallel Determination of Polypeptide and Oligosaccharide Connectivities by Energy-Resolved Collison-Induced Dissociation of Protonated O-Glycopeptides Derived from Nonspecific Proteolysis. J Am Soc Mass Spectrom. 2020 Mar 4;31(3):624-632. doi: 10.1021/jasms.9b00065. Epub 2020 Feb 21. PMID: 32126781; PMCID: PMC7164384.

Rister AL, Dodds ED. Liquid chromatography-ion mobility spectrometry-mass spectrometry analysis of multiple classes of steroid hormone isomers in a mixture. J Chromatogr B Analyt Technol Biomed Life Sci. 2020 Jan 15;1137:121941. doi: 10.1016/j.jchromb.2019.121941. Epub 2019 Dec 16. PMID: 31877426; PMCID: PMC6960350.

Rister AL, Dodds ED. Steroid analysis by ion mobility spectrometry. Steroids. 2020 Jan;153:108531. doi: 10.1016/j.steroids.2019.108531. Epub 2019 Oct 28. PMID: 31672629; PMCID: PMC6986338.

Brooks J, Jaberi A, Yang R. Microfluidic Device for Localized Electroporation. Methods Mol Biol. 2020;2050:91-97. doi: 10.1007/978-1-4939-9740-4_10. PMID: 31468483; PMCID: PMC9262042.

Frisbie CP, Lushnikov AY, Krasnoslobodtsev AV, Riethoven JM, Clarke JL, Stepchenkova EI, Petrosyan A. Post-ER Stress Biogenesis of Golgi Is Governed by Giantin. Cells. 2019 Dec 13;8(12):1631. doi: 10.3390/cells8121631. PMID: 31847122; PMCID: PMC6953117.

Rister AL, Bidne KL, Wood JR, Dodds ED. MICROSCALE SERUM EXTRACTION METHOD FOR THE SIMULTANEOUS ANALYSIS OF CORTICOSTERONE AND LIPIDS. Anal Methods. 2019 Dec 7;11(45):5746-5749. doi: 10.1039/c9ay01757g. Epub 2019 Oct 29. PMID:32148562; PMCID: PMC7059636.

Petrosyan A. Unlocking Golgi: Why Does Morphology Matter? Biochemistry (Mosc). 2019 Dec;84(12):1490-1501. doi: 10.1134/S0006297919120083. PMID: 31870253; PMCID: PMC7291852.

Vila T, Kong EF, Ibrahim A, Piepenbrink K, Shetty AC, McCracken C, Bruno V, Jabra-Rizk MA. <i>Candida albicans</i> quorum-sensing molecule farnesol modulates staphyloxanthin production and activates the thiol-based oxidative-stress response in <i>Staphylococcus aureus</i>. Virulence. 2019 Dec;10(1):625-642. doi: 10.1080/21505594.2019.1635418. PMID: 31280653; PMCID: PMC6629188.

Chang L, Wang YC, Ershad F, Yang R, Yu C, Fan Y. Wearable Devices for Single-Cell Sensing and Transfection. Trends Biotechnol. 2019 Nov;37(11):1175-1188. doi: 10.1016/j.tibtech.2019.04.001. Epub 2019 May 6. PMID: 31072609; PMCID: PMC9245325.

Shanmugam S, Patel D, Wolpert JM, Keshvani C, Liu X, Bergeson SE, Kidambi S, Mahimainathan L, Henderson GI, Narasimhan M. Ethanol Impairs NRF2/Antioxidant and Growth Signaling in the Intact Placenta In Vivo and in Human Trophoblasts. Biomolecules. 2019 Oct 30;9(11):669. doi: 10.3390/biom9110669. PMID: 31671572;PMCID: PMC6921053.

Daverey A, Levytskyy RM, Stanke KM, Viana MP, Swenson S, Hayward SL, Narasimhan M, Khalimonchuk O, Kidambi S. Depletion of mitochondrial protease OMA1 alters proliferative properties and promotes metastatic growth of breast cancer cells. Sci Rep. 2019 Oct 14;9(1):14746. doi: 10.1038/s41598-019-49327-2. PMID: 31611601; PMCID: PMC6791882.

Rister AL, Dodds ED. Ion Mobility Spectrometry and Tandem Mass Spectrometry Analysis of Estradiol Glucuronide Isomers. J Am Soc Mass Spectrom. 2019 Oct;30(10):2037-2040. doi: 10.1007/s13361-019-02272-w. Epub 2019 Aug 5. PMID: 31385258; PMCID: PMC6812596.

Gelb AS , Lai R , Li H , Dodds ED . Composition and charge state influence on the ion-neutral collision cross sections of protonated N-linked glycopeptides: an experimental and theoretical deconstruction of coulombic repulsion vs. charge solvation effects. Analyst. 2019 Sep 23;144(19):5738-5747. doi: 10.1039/c9an00875f. PMID: 31453603; PMCID: PMC6756964.

Sun IC, Emelianov S. Gas-generating nanoparticles for contrast-enhanced ultrasound imaging. Nanoscale. 2019 Sep 21;11(35):16235-16240. doi: 10.1039/c9nr04471j. Epub 2019 Aug 27. PMID: 31453614; PMCID: PMC6759366.

Beck JR, Cabral F, Rasineni K, Casey CA, Harris EN, Stains CI. A Panel of Protein Kinase Chemosensors Distinguishes Different Types of Fatty Liver Disease. Biochemistry. 2019 Sep 17;58(37):3911-3917. doi: 10.1021/acs.biochem.9b00547. Epub 2019 Aug 29. PMID: 31433166; PMCID: PMC6820001.

Vu T, Siemek P, Bhinderwala F, Xu Y, Powers R. Evaluation of Multivariate Classification Models for Analyzing NMR Metabolomics Data. J Proteome Res. 2019 Sep 6;18(9):3282-3294. doi: 10.1021/acs.jproteome.9b00227. Epub 2019 Aug 22. PMID: 31382745; PMCID: PMC6733656.

Rodrigues de Almeida N, Catazaro J, Krishnaiah M, Singh Chhonker Y, Murry DJ, Powers R, Conda-Sheridan M. Understanding interactions of Citropin 1.1 analogues with model membranes and their influence on biological activity. Peptides. 2019 Sep;119:170119. doi: 10.1016/j.peptides.2019.170119. Epub 2019 Jul 20. PMID: 31336137; PMCID: PMC7161086.

Hu H, Petrosyan A, Osna NA, Liu T, Olou AA, Alakhova DY, Singh PK, Kabanov AV, Faber EA Jr, Bronich TK. Pluronic block copolymers enhance the anti-myeloma activity of proteasome inhibitors. J Control Release. 2019 Jul 28;306:149-164. doi: 10.1016/j.jconrel.2019.05.026. Epub 2019 May 20. PMID: 31121280; PMCID: PMC6822276.

Hofferber EM, Stapleton JA, Adams J, Kuss M, Duan B, Iverson NM. Implantable Nanotube Sensor Platform for Rapid Analyte Detection. Macromol Biosci. 2019 Jun;19(6):e1800469. doi: 10.1002/mabi.201800469. Epub 2019 Apr 3. PMID: 30942955; PMCID: PMC6827871.

Catazaro J, Caprez A, Swanson D, Powers R. Functional Evolution of Proteins. Proteins. 2019 Jun;87(6):492-501. doi: 10.1002/prot.25670. Epub 2019 Feb 19. PMID: 30714210; PMCID: PMC6462239.

Zinniel DK, Sittiwong W, Marshall DD, Rathnaiah G, Sakallioglu IT, Powers R, Dussault PH, Barletta RG. Novel Amphiphilic Cyclobutene and Cyclobutane <i>cis</i>-C₁₈ Fatty Acid Derivatives Inhibit <i>Mycobacterium avium</i> subsp. <i>paratuberculosis</i> Growth. Vet Sci. 2019 May 24;6(2):46. doi: 10.3390/vetsci6020046. PMID: 31137605; PMCID: PMC6631517.

Rister AL, Martin TL, Dodds ED. Formation of multimeric steroid metal adducts and implications for isomer mixture separation by traveling wave ion mobility spectrometry. J Mass Spectrom. 2019 May;54(5):429-436. doi: 10.1002/jms.4350. PMID: 30860640; PMCID: PMC6556764.

Li X, Gong W, Wang H, Li T, Attri KS, Lewis RE, Kalil AC, Bhinderwala F, Powers R, Yin G, Herring LE, Asara JM, Lei YL, Yang X, Rodriguez DA, Yang M, Green DR, Singh PK, Wen H. O-GlcNAc Transferase Suppresses Inflammation and Necroptosis by Targeting Receptor-Interacting Serine/Threonine-Protein Kinase 3. Immunity. 2019 Mar 19;50(3):576-590.e6. doi: 10.1016/j.immuni.2019.01.007. Epub 2019 Feb 12. Erratum in: Immunity. 2019 Apr 16;50(4):1115. doi: 10.1016/j.immuni.2019.03.008. PMID: 30770249; PMCID: PMC6426684.

Piepenbrink KH. DNA Uptake by Type IV Filaments. Front Mol Biosci. 2019 Feb 5;6:1. doi: 10.3389/fmolb.2019.00001. PMID: 30805346; PMCID: PMC6370729.

Rister AL, Martin TL, Dodds ED. Application of Group I Metal Adduction to the Separation of Steroids by Traveling Wave Ion Mobility Spectrometry. J Am Soc Mass Spectrom. 2019 Feb;30(2):248-255. doi: 10.1007/s13361-018-2085-9. Epub 2018 Nov 9. PMID: 30414066; PMCID: PMC6551524.

Ronish LA, Lillehoj E, Fields JK, Sundberg EJ, Piepenbrink KH. The structure of PilA from <i>Acinetobacter baumannii</i> AB5075 suggests a mechanism for functional specialization in <i>Acinetobacter</i> type IV pili. J Biol Chem. 2019 Jan 4;294(1):218-230. doi: 10.1074/jbc.RA118.005814. Epub 2018 Nov 9. PMID: 30413536; PMCID: PMC6322890.

Yang Y, Zeng B, Sun Z, Esfahani AM, Hou J, Jiao ND, Liu L, Chen L, Basson MD, Dong L, Yang R, Xi N. Optimization of Protein-Protein Interaction Measurements for Drug Discovery Using AFM Force Spectroscopy. IEEE Trans Nanotechnol. 2019;18:509-517. doi: 10.1109/tnano.2019.2915507. Epub 2019 May 14. PMID: 32051682; PMCID: PMC7015265.

Bhinderwala F, Powers R. NMR Metabolomics Protocols for Drug Discovery. Methods Mol Biol. 2019;2037:265-311. doi: 10.1007/978-1-4939-9690-2_16. PMID: 31463851; PMCID: PMC7025395.

Bhinderwala F, Lei S, Woods J, Rose J, Marshall DD, Riekeberg E, Leite AL, Morton M, Dodds ED, Franco R, Powers R. Metabolomics Analyses from Tissues in Parkinson's Disease. Methods Mol Biol. 2019;1996:217-257. doi: 10.1007/978-1-4939-9488-5_19. PMID: 31127560; PMCID: PMC6625357.

Manca S, Frisbie CP, LaGrange CA, Casey CA, Riethoven JM, Petrosyan A. The Role of Alcohol-Induced Golgi Fragmentation for Androgen Receptor Signaling in Prostate Cancer. Mol Cancer Res. 2019 Jan;17(1):225-237. doi: 10.1158/1541-7786.MCR-18-0577. Epub 2018 Sep 17. PMID: 30224543; PMCID: PMC6318054.

Gebregiworgis T, Bhinderwala F, Purohit V, Chaika NV, Singh PK, Powers R. Insights into gemcitabine resistance and the potential for therapeutic monitoring. Metabolomics. 2018 Nov 27;14(12):156. doi: 10.1007/s11306-018-1452-7. PMID: 30830412; PMCID: PMC6620022.

Casey CA, Thomes P, Manca S, Petrosyan A. Giantin Is Required for Post-Alcohol Recovery of Golgi in Liver Cells. Biomolecules. 2018 Nov 16;8(4):150. doi: 10.3390/biom8040150. PMID: 30453527; PMCID: PMC6316505.

Bhinderwala F, Wase N, DiRusso C, Powers R. Combining Mass Spectrometry and NMR Improves Metabolite Detection and Annotation. J Proteome Res. 2018 Nov 2;17(11):4017-4022. doi: 10.1021/acs.jproteome.8b00567. Epub 2018 Oct 12. PMID: 30303385; PMCID: PMC6668615.

Lai R, Tang WJ, Li H. Catalytic Mechanism of Amyloid-β Peptide Degradation by Insulin Degrading Enzyme: Insights from Quantum Mechanics and Molecular Mechanics Style Møller-Plesset Second Order Perturbation Theory Calculation. J Chem Inf Model. 2018 Sep 24;58(9):1926-1934. doi: 10.1021/acs.jcim.8b00406. Epub 2018 Sep 6. PMID: 30133282; PMCID: PMC6670292.

Aboufazeli F , Dodds ED . Precursor ion survival energies of protonated N-glycopeptides and their weak dependencies on high mannose N-glycan composition in collision-induced dissociation. Analyst. 2018 Sep 10;143(18):4459-4468. doi: 10.1039/c8an00830b. PMID: 30151520; PMCID: PMC6131044.

Monemian Esfahani A, Zhao W, Chen JY, Huang C, Xi N, Xi J, Yang R. On the Measurement of Energy Dissipation of Adhered Cells with the Quartz Microbalance with Dissipation Monitoring. Anal Chem. 2018 Sep 4;90(17):10340-10349. doi: 10.1021/acs.analchem.8b02153. Epub 2018 Aug 22. PMID: 30088414; PMCID: PMC6669898.

Vu T, Riekeberg E, Qiu Y, Powers R. Comparing normalization methods and the impact of noise. Metabolomics. 2018 Aug 10;14(8):108. doi: 10.1007/s11306-018-1400-6. PMID: 30830388; PMCID: PMC6638559.

Yang Y , Yu J , Monemian Esfahani A , Seiffert-Sinha K , Xi N , Lee I , Sinha AA , Chen L , Sun Z , Yang R , Dong L . Single-cell membrane drug delivery using porous pen nanodeposition. Nanoscale. 2018 Jul 9;10(26):12704-12712. doi: 10.1039/c8nr02600a. PMID: 29946596; PMCID: PMC6528655.

Bhinderwala F, Lonergan S, Woods J, Zhou C, Fey PD, Powers R. Expanding the Coverage of the Metabolome with Nitrogen-Based NMR. Anal Chem. 2018 Apr 3;90(7):4521-4528. doi: 10.1021/acs.analchem.7b04922. Epub 2018 Mar 15. PMID: 29505241; PMCID: PMC6472702.

Yang R, Broussard JA, Green KJ, Espinosa HD. Techniques to stimulate and interrogate cell-cell adhesion mechanics. Extreme Mech Lett. 2018 Apr;20:125-139. doi: 10.1016/j.eml.2017.12.002. Epub 2017 Dec 7. PMID: 30320194; PMCID: PMC6181239.

Lai R, Dodds ED, Li H. Molecular dynamics simulation of ion mobility in gases. J Chem Phys. 2018 Feb 14;148(6):064109. doi: 10.1063/1.4998955. PMID: 29448783; PMCID: PMC5812742.

Catazaro J, Andrews T, Milkovic NM, Lin J, Lowe AJ, Wilson MA, Powers R. ¹⁵N CEST data and traditional model-free analysis capture fast internal dynamics of DJ-1. Anal Biochem. 2018 Feb 1;542:24-28. doi: 10.1016/j.ab.2017.11.012. Epub 2017 Nov 21. PMID: 29169778; PMCID: PMC5817017.

Kubyshkin AV, Fomochkina II, Petrosyan AM. THE IMPACT OF ALCOHOL ON PRO-METASTATIC N-GLYCOSYLATION IN PROSTATE CANCER. Krim Z Eksp Klin Med. 2018;8(4):11-20. PMID: 31131224; PMCID: PMC6534161. 

Hayward SL, Kidambi S. CD44 Targeted Lipid Nanoparticles for MicroRNA Therapy. Methods Mol Biol. 2018;1831:95-109. doi: 10.1007/978-1-4939-8661-3_8. PMID: 30051427.

Gardner SG, Marshall DD, Daum RS, Powers R, Somerville GA. Metabolic Mitigation of Staphylococcus aureus Vancomycin Intermediate-Level Susceptibility. Antimicrob Agents Chemother. 2017 Dec 21;62(1):e01608-17. doi: 10.1128/AAC.01608-17. PMID: 29109158; PMCID: PMC5740343.

Gomes-Neto JC, Kittana H, Mantz S, Segura Munoz RR, Schmaltz RJ, Bindels LB, Clarke J, Hostetter JM, Benson AK, Walter J, Ramer-Tait AE. A gut pathobiont synergizes with the microbiota to instigate inflammatory disease marked by immunoreactivity against other symbionts but not itself. Sci Rep. 2017 Dec 18;7(1):17707. doi: 10.1038/s41598-017-18014-5. PMID: 29255158; PMCID: PMC5735134.

Kolli V, Schumacher KN, Dodds ED. Ion mobility-resolved collision-induced dissociation and electron transfer dissociation of N-glycopeptides: gathering orthogonal connectivity information from a single mass-selected precursor ion population. Analyst. 2017 Dec 4;142(24):4691-4702. doi: 10.1039/c7an01196b. PMID: 29119999; PMCID: PMC7169368.

Shang X, Lai R, Song X, Li H, Niu W, Guo J. Improved Photoinduced Fluorogenic Alkene-Tetrazole Reaction for Protein Labeling. Bioconjug Chem. 2017 Nov 15;28(11):2859-2864. doi: 10.1021/acs.bioconjchem.7b00562. Epub 2017 Oct 26. PMID: 29022697; PMCID: PMC5688003.

Bernier M, Catazaro J, Singh NS, Wnorowski A, Boguszewska-Czubara A, Jozwiak K, Powers R, Wainer IW. GPR55 receptor antagonist decreases glycolytic activity in PANC-1 pancreatic cancer cell line and tumor xenografts. Int J Cancer. 2017 Nov 15;141(10):2131-2142. doi: 10.1002/ijc.30904. Epub 2017 Aug 7. PMID: 28741686; PMCID: PMC6028007.

Rose J, Brian C, Woods J, Pappa A, Panayiotidis MI, Powers R, Franco R. Mitochondrial dysfunction in glial cells: Implications for neuronal homeostasis and survival. Toxicology. 2017 Nov 1;391:109-115. doi: 10.1016/j.tox.2017.06.011. Epub 2017 Jun 26. PMID: 28655545; PMCID: PMC5681369.

Gebregiworgis T, Purohit V, Shukla SK, Tadros S, Chaika NV, Abrego J, Mulder SE, Gunda V, Singh PK, Powers R. Glucose Limitation Alters Glutamine Metabolism in MUC1-Overexpressing Pancreatic Cancer Cells. J Proteome Res. 2017 Oct 6;16(10):3536-3546. doi: 10.1021/acs.jproteome.7b00246. Epub 2017 Aug 30. PMID: 28809118; PMCID: PMC5634392.

Natarajan G, Perriotte-Olson C, Bhinderwala F, Powers R, Desouza CV, Talmon GA, Yuhang J, Zimmerman MC, Kabanov AV, Saraswathi V. Nanoformulated copper/zinc superoxide dismutase exerts differential effects on glucose vs lipid homeostasis depending on the diet composition possibly via altered AMPK signaling. Transl Res. 2017 Oct;188:10-26. doi: 10.1016/j.trsl.2017.08.002. Epub 2017 Aug 15. PMID: 28867395; PMCID: PMC5819896.

Duszenko N, Buan NR. Physiological Evidence for Isopotential Tunneling in the Electron Transport Chain of Methane-Producing Archaea. Appl Environ Microbiol. 2017 Aug 31;83(18):e00950-17. doi: 10.1128/AEM.00950-17. PMID: 28710268; PMCID: PMC5583484.

Riekeberg E, Powers R. New frontiers in metabolomics: from measurement to insight. F1000Res. 2017 Jul 19;6:1148. doi: 10.12688/f1000research.11495.1. PMID: 28781759; PMCID: PMC5521158.

Wang Y, Singh NK, Spear TT, Hellman LM, Piepenbrink KH, McMahan RH, Rosen HR, Vander Kooi CW, Nishimura MI, Baker BM. How an alloreactive T-cell receptor achieves peptide and MHC specificity. Proc Natl Acad Sci U S A. 2017 Jun 13;114(24):E4792-E4801. doi: 10.1073/pnas.1700459114. Epub 2017 Jun 1. PMID: 28572406; PMCID: PMC5474831.

Powers R, Lei S, Anandhan A, Marshall DD, Worley B, Cerny RL, Dodds ED, Huang Y, Panayiotidis MI, Pappa A, Franco R. Metabolic Investigations of the Molecular Mechanisms Associated with Parkinson's Disease. Metabolites. 2017 May 24;7(2):22. doi: 10.3390/metabo7020022. PMID: 28538683; PMCID: PMC5487993.

Cashman M, Catlett JL, Cohen MB, Buan NR, Sakkaff Z, Pierobon M, Kelley CA. BioSIMP: Using Software Testing Techniques for Sampling and Inference in Biological Organisms. SE4Science 2017 (2017). 2017 May;2017:2-8. doi: 10.1109/se4science.2017.9. Epub 2017 Jul 3. PMID: 36848304; PMCID: PMC9949343.

Zhou X, Lesiak L, Lai R, Beck JR, Zhao J, Elowsky CG, Li H, Stains CI. Chemoselective Alteration of Fluorophore Scaffolds as a Strategy for the Development of Ratiometric Chemodosimeters. Angew Chem Int Ed Engl. 2017 Apr 3;56(15):4197-4200. doi: 10.1002/anie.201612628. Epub 2017 Mar 20. PMID: 28319304; PMCID: PMC5453638.

Meints LM, Poston AW, Piligian BF, Olson CD, Badger KS, Woodruff PJ, Swarts BM. Rapid One-step Enzymatic Synthesis and All-aqueous Purification of Trehalose Analogues. J Vis Exp. 2017 Feb 17;(120):54485. doi: 10.3791/54485. PMID: 28287534; PMCID: PMC5351780.

Shang X, Song X, Faller C, Lai R, Li H, Cerny R, Niu W, Guo J. Fluorogenic protein labeling using a genetically encoded unstrained alkene. Chem Sci. 2017 Feb 1;8(2):1141-1145. doi: 10.1039/c6sc03635j. Epub 2016 Sep 26. PMID: 28451254; PMCID: PMC5369545.

Beck JR, Harris EN, Stains CI. Quantification of Cell Signaling Networks Using Kinase Activity Chemosensors. Methods Mol Biol. 2017;1636:61-70. doi: 10.1007/978-1-4939-7154-1_4. PMID: 28730472; PMCID: PMC6623968.

Natarajan V, Harris EN, Kidambi S. SECs (Sinusoidal Endothelial Cells),Liver Microenvironment, and Fibrosis. Biomed Res Int. 2017;2017:4097205. doi:10.1155/2017/4097205. Epub 2017 Feb 15. PMID: 28293634; PMCID: PMC5331310.

Natarajan V, Berglund EJ, Chen DX, Kidambi S. Substrate stiffness regulates primary hepatocyte functions. RSC Adv. 2015;5(99):80956-80966. doi:10.1039/C5RA15208A. Epub 2015 Sep 14. PMID: 32733675; PMCID: PMC7392243.